IL_5J4D_039

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_039 not in the Motif Atlas

Geometric match to IL_4LFB_039

Geometric discrepancy: 0.1556

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5J4D|1|A|G|993
5J4D|1|A|A|994
5J4D|1|A|C|995
5J4D|1|A|A|996
5J4D|1|A|U|997
*
5J4D|1|A|A|1044
5J4D|1|A|C|1045

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain WA

30S ribosomal protein S14 type Z