IL_5J4D_058
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GU(5MC)AC*GAAGUC
- Length
- 11 nucleotides
- Bulged bases
- 5J4D|1|A|A|1492, 5J4D|1|A|A|1493
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_058 not in the Motif Atlas
- Homologous match to IL_4LFB_058
- Geometric discrepancy: 0.4926
- The information below is about IL_4LFB_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J4D|1|A|G|1405
5J4D|1|A|U|1406
5J4D|1|A|5MC|1407
5J4D|1|A|A|1408
5J4D|1|A|C|1409
*
5J4D|1|A|G|1491
5J4D|1|A|A|1492
5J4D|1|A|A|1493
5J4D|1|A|G|1494
5J4D|1|A|U|1495
5J4D|1|A|C|1496
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain HA
- mRNA
- Chain JA
- Peptide chain release factor 1
- Chain UA
- 30S ribosomal protein S12
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