IL_5J4D_063
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGGAG*CAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_063 not in the Motif Atlas
- Homologous match to IL_6CZR_172
- Geometric discrepancy: 0.17
- The information below is about IL_6CZR_172
- Detailed Annotation
- Isolated basepair with bulged bases
- Broad Annotation
- Isolated basepair with bulged bases
- Motif group
- IL_97255.3
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5J4D|1|A|C|1440
5J4D|1|A|G|1441
5J4D|1|A|G|1442
5J4D|1|A|G|1443
5J4D|1|A|A|1446
5J4D|1|A|G|1447
*
5J4D|1|A|C|1459
5J4D|1|A|A|1460
5J4D|1|A|G|1461
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain CB
- 30S ribosomal protein S20
- Chain Q
- 50S ribosomal protein L19
Coloring options: