IL_5J4D_064
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_064 not in the Motif Atlas
- Homologous match to IL_9DFE_001
- Geometric discrepancy: 0.0583
- The information below is about IL_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.2
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
5J4D|1|B|G|24
5J4D|1|B|U|25
5J4D|1|B|G|26
5J4D|1|B|G|27
5J4D|1|B|A|28
5J4D|1|B|U|29
5J4D|1|B|G|30
*
5J4D|1|B|C|510
5J4D|1|B|U|511
5J4D|1|B|G|512
5J4D|1|B|A|513
5J4D|1|B|A|514
5J4D|1|B|A|515
5J4D|1|B|C|516
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain CA
- 50S ribosomal protein L32
- Chain R
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L22
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