IL_5J4D_092
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCACU*AAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_092 not in the Motif Atlas
- Homologous match to IL_9DFE_028
- Geometric discrepancy: 0.0811
- The information below is about IL_9DFE_028
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_16301.1
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
5J4D|1|B|G|864
5J4D|1|B|C|865
5J4D|1|B|A|866
5J4D|1|B|C|867
5J4D|1|B|U|868
*
5J4D|1|B|A|909
5J4D|1|B|A|910
5J4D|1|B|A|911
5J4D|1|B|C|912
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5S ribosomal RNA; 5S rRNA
- Chain N
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L25
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