IL_5J4D_097

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_097 not in the Motif Atlas

Homologous match to IL_9DFE_033

Geometric discrepancy: 0.0878

The information below is about IL_9DFE_033

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

5J4D|1|B|G|952
5J4D|1|B|A|953
5J4D|1|B|G|954
*
5J4D|1|B|U|963
5J4D|1|B|C|964
5J4D|1|B|C|965

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L16