IL_5J4D_099
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 5J4D|1|B|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_099 not in the Motif Atlas
- Homologous match to IL_5J7L_277
- Geometric discrepancy: 0.0845
- The information below is about IL_5J7L_277
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
5J4D|1|B|C|998
5J4D|1|B|U|999
5J4D|1|B|A|1000
5J4D|1|B|A|1001
5J4D|1|B|G|1002
*
5J4D|1|B|C|1153
5J4D|1|B|G|1154
5J4D|1|B|A|1155
5J4D|1|B|A|1156
5J4D|1|B|G|1157
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 50S ribosomal protein L30
- Chain C
- 5S ribosomal RNA; 5S rRNA
- Chain R
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L21
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