IL_5J4D_102
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAGUG*CUCAAG
- Length
- 13 nucleotides
- Bulged bases
- 5J4D|1|B|C|1142, 5J4D|1|B|A|1143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_102 not in the Motif Atlas
- Homologous match to IL_4WF9_039
- Geometric discrepancy: 0.0663
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.6
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 6
Unit IDs
5J4D|1|B|C|1018
5J4D|1|B|U|1019
5J4D|1|B|A|1020
5J4D|1|B|A|1021
5J4D|1|B|G|1022
5J4D|1|B|U|1023
5J4D|1|B|G|1024
*
5J4D|1|B|C|1140
5J4D|1|B|U|1141
5J4D|1|B|C|1142
5J4D|1|B|A|1142|||B
5J4D|1|B|A|1143
5J4D|1|B|G|1144
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5S ribosomal RNA; 5S rRNA
- Chain GA
- 50S ribosomal protein L36
- Chain K
- 50S ribosomal protein L13
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