IL_5J4D_105
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGAAGACAGCCAG*CUGGUCGAGU
- Length
- 24 nucleotides
- Bulged bases
- 5J4D|1|B|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5J4D|1|B|G|1042
5J4D|1|B|C|1043
5J4D|1|B|G|1044
5J4D|1|B|A|1045
5J4D|1|B|A|1046
5J4D|1|B|G|1047
5J4D|1|B|A|1048
5J4D|1|B|C|1049
5J4D|1|B|A|1050
5J4D|1|B|G|1051
5J4D|1|B|C|1052
5J4D|1|B|C|1053
5J4D|1|B|A|1054
5J4D|1|B|G|1055
*
5J4D|1|B|C|1104
5J4D|1|B|U|1105
5J4D|1|B|G|1106
5J4D|1|B|G|1107
5J4D|1|B|U|1108
5J4D|1|B|C|1109
5J4D|1|B|G|1110
5J4D|1|B|A|1111
5J4D|1|B|G|1112
5J4D|1|B|U|1113
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain I
- 50S ribosomal protein L6
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