IL_5J4D_114
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 5J4D|1|B|A|1379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_114 not in the Motif Atlas
- Homologous match to IL_9DFE_051
- Geometric discrepancy: 0.0789
- The information below is about IL_9DFE_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_08938.1
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 22
Unit IDs
5J4D|1|B|C|1351
5J4D|1|B|U|1352
5J4D|1|B|A|1353
5J4D|1|B|A|1354
5J4D|1|B|G|1355
*
5J4D|1|B|C|1376
5J4D|1|B|G|1377
5J4D|1|B|A|1378
5J4D|1|B|A|1379
5J4D|1|B|G|1380
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L2
- Chain EA
- 50S ribosomal protein L34
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