IL_5J4D_136

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_136 not in the Motif Atlas

Homologous match to IL_9DFE_074

Geometric discrepancy: 0.1398

The information below is about IL_9DFE_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5J4D|1|B|U|1851
5J4D|1|B|C|1852
5J4D|1|B|A|1853
5J4D|1|B|A|1854
5J4D|1|B|G|1855
*
5J4D|1|B|C|1887
5J4D|1|B|G|1888
5J4D|1|B|A|1889
5J4D|1|B|A|1890
5J4D|1|B|G|1891

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain E

50S ribosomal protein L2