IL_5J4D_137
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGAG*CGAAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_137 not in the Motif Atlas
- Homologous match to IL_9DFE_075
- Geometric discrepancy: 0.0841
- The information below is about IL_9DFE_075
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
5J4D|1|B|G|1856
5J4D|1|B|G|1857
5J4D|1|B|G|1858
5J4D|1|B|A|1859
5J4D|1|B|G|1860
*
5J4D|1|B|C|1882
5J4D|1|B|G|1883
5J4D|1|B|A|1884
5J4D|1|B|A|1885
5J4D|1|B|C|1886
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain D
- Transfer RNA; tRNA
- Chain Y
- 50S ribosomal protein L28
Coloring options: