IL_5J4D_154

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_154 not in the Motif Atlas

Homologous match to IL_9DFE_092

Geometric discrepancy: 0.0773

The information below is about IL_9DFE_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

5J4D|1|B|G|2454
5J4D|1|B|G|2455
*
5J4D|1|B|C|2496
5J4D|1|B|A|2497
5J4D|1|B|C|2498

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L3

Chain JA

Peptide chain release factor 1

Chain N

50S ribosomal protein L16

Chain X

50S ribosomal protein L27