IL_5J4D_169
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUAAC*GGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 5J4D|1|B|A|2765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_169 not in the Motif Atlas
- Homologous match to IL_9DFE_106
- Geometric discrepancy: 0.0644
- The information below is about IL_9DFE_106
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5J4D|1|B|G|2737
5J4D|1|B|A|2738
5J4D|1|B|U|2739
5J4D|1|B|A|2740
5J4D|1|B|A|2741
5J4D|1|B|C|2742
*
5J4D|1|B|G|2762
5J4D|1|B|G|2763
5J4D|1|B|A|2764
5J4D|1|B|A|2765
5J4D|1|B|G|2766
5J4D|1|B|C|2767
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain GA
- 50S ribosomal protein L36
- Chain I
- 50S ribosomal protein L6
- Chain K
- 50S ribosomal protein L13
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