IL_5J4D_172
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGUAAG*UUGAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_172 not in the Motif Atlas
- Homologous match to IL_9DFE_109
- Geometric discrepancy: 0.0782
- The information below is about IL_9DFE_109
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48489.1
- Basepair signature
- cWW-tSH-L-tHH-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
5J4D|1|B|U|2847
5J4D|1|B|G|2848
5J4D|1|B|U|2849
5J4D|1|B|A|2850
5J4D|1|B|A|2851
5J4D|1|B|G|2852
*
5J4D|1|B|U|2865
5J4D|1|B|U|2866
5J4D|1|B|G|2867
5J4D|1|B|A|2868
5J4D|1|B|G|2869
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain O
- 50S ribosomal protein L17
- Chain Q
- 50S ribosomal protein L19
Coloring options: