IL_5J4D_220

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCU*G(2MG)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_220 not in the Motif Atlas

Homologous match to IL_4LFB_043

Geometric discrepancy: 0.0832

The information below is about IL_4LFB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4D|1|FB|G|1050
5J4D|1|FB|C|1051
5J4D|1|FB|U|1052
*
5J4D|1|FB|G|1206
5J4D|1|FB|2MG|1207
5J4D|1|FB|C|1208

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S14 type Z

Chain OC

Peptide chain release factor 1

Chain QC

30S ribosomal protein S3