IL_5J4D_238

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_238 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.0803

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

5J4D|1|FB|C|1431
5J4D|1|FB|G|1432
5J4D|1|FB|A|1433
5J4D|1|FB|A|1434
5J4D|1|FB|G|1435
*
5J4D|1|FB|C|1466
5J4D|1|FB|G|1467
5J4D|1|FB|A|1468
5J4D|1|FB|G|1469

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain GB

Large subunit ribosomal RNA; LSU rRNA

Chain HD

30S ribosomal protein S20

Chain VB

50S ribosomal protein L19