IL_5J4D_246
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_246 not in the Motif Atlas
- Homologous match to IL_9DFE_006
- Geometric discrepancy: 0.0495
- The information below is about IL_9DFE_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
5J4D|1|GB|G|188
5J4D|1|GB|G|189
5J4D|1|GB|A|190
5J4D|1|GB|A|191
5J4D|1|GB|C|192
5J4D|1|GB|U|193
5J4D|1|GB|G|194
*
5J4D|1|GB|C|201
5J4D|1|GB|U|202
5J4D|1|GB|C|203
5J4D|1|GB|A|204
5J4D|1|GB|G|205
5J4D|1|GB|U|206
5J4D|1|GB|A|207
5J4D|1|GB|C|208
Current chains
- Chain GB
- 25S ribosomal RNA
Nearby chains
- Chain DC
- 50S ribosomal protein L28
- Chain JC
- 50S ribosomal protein L34
- Chain KC
- 50S ribosomal protein L35
- Chain RB
- 50S ribosomal protein L15
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