IL_5J4D_256

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_256 not in the Motif Atlas

Homologous match to IL_9DFE_014

Geometric discrepancy: 0.0571

The information below is about IL_9DFE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5J4D|1|GB|U|606
5J4D|1|GB|U|607
5J4D|1|GB|A|608
5J4D|1|GB|A|609|||A
5J4D|1|GB|G|609|||B
*
5J4D|1|GB|C|618|||B
5J4D|1|GB|G|619
5J4D|1|GB|G|620
5J4D|1|GB|A|621
5J4D|1|GB|G|622

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain LB

50S ribosomal protein L4

Chain RB

50S ribosomal protein L15