IL_5J4D_257

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_257 not in the Motif Atlas

Homologous match to IL_5J7L_259

Geometric discrepancy: 0.0596

The information below is about IL_5J7L_259

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5J4D|1|GB|C|672
5J4D|1|GB|C|673
5J4D|1|GB|G|674
*
5J4D|1|GB|C|806
5J4D|1|GB|U|807
5J4D|1|GB|G|808

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain LB

50S ribosomal protein L4

Chain RB

50S ribosomal protein L15