IL_5J4D_261

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_261 not in the Motif Atlas

Homologous match to IL_9DFE_019

Geometric discrepancy: 0.0644

The information below is about IL_9DFE_019

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

5J4D|1|GB|U|703
5J4D|1|GB|G|704
5J4D|1|GB|A|705
5J4D|1|GB|A|706
5J4D|1|GB|G|707
*
5J4D|1|GB|U|724
5J4D|1|GB|G|725
5J4D|1|GB|G|726
5J4D|1|GB|A|727
5J4D|1|GB|G|728

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L2