IL_5J4D_276

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

5J4D|1|GB|A|1156

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_276 not in the Motif Atlas

Homologous match to IL_5J7L_277

Geometric discrepancy: 0.0852

The information below is about IL_5J7L_277

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

5J4D|1|GB|C|998
5J4D|1|GB|U|999
5J4D|1|GB|A|1000
5J4D|1|GB|A|1001
5J4D|1|GB|G|1002
*
5J4D|1|GB|C|1153
5J4D|1|GB|G|1154
5J4D|1|GB|A|1155
5J4D|1|GB|A|1156
5J4D|1|GB|G|1157

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain FC

50S ribosomal protein L30

Chain HB

5S ribosomal RNA; 5S rRNA

Chain WB

50S ribosomal protein L20

Chain XB

50S ribosomal protein L21