IL_5J4D_280
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 5J4D|1|GB|U|1026, 5J4D|1|GB|A|1127, 5J4D|1|GB|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_280 not in the Motif Atlas
- Homologous match to IL_9DFE_039
- Geometric discrepancy: 0.1304
- The information below is about IL_9DFE_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5J4D|1|GB|G|1024
5J4D|1|GB|G|1025
5J4D|1|GB|U|1026
5J4D|1|GB|A|1027
5J4D|1|GB|A|1028
5J4D|1|GB|A|1029
5J4D|1|GB|G|1030
*
5J4D|1|GB|C|1124
5J4D|1|GB|G|1125
5J4D|1|GB|A|1126
5J4D|1|GB|A|1127
5J4D|1|GB|A|1128
5J4D|1|GB|A|1129
5J4D|1|GB|U|1130
5J4D|1|GB|G|1131
5J4D|1|GB|A|1132
5J4D|1|GB|U|1133
5J4D|1|GB|C|1135
5J4D|1|GB|G|1136
5J4D|1|GB|G|1137
5J4D|1|GB|G|1138
5J4D|1|GB|G|1139
5J4D|1|GB|C|1140
Current chains
- Chain GB
- 25S ribosomal RNA
Nearby chains
- Chain HB
- 5S ribosomal RNA; 5S rRNA
- Chain KB
- 50S ribosomal protein L3
- Chain LC
- 50S ribosomal protein L36
- Chain PB
- 50S ribosomal protein L13
- Chain SB
- 50S ribosomal protein L16
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