IL_5J4D_282

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGAAGACAG*UCGAGU

Length

16 nucleotides

Bulged bases

5J4D|1|GB|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4D|1|GB|G|1042
5J4D|1|GB|C|1043
5J4D|1|GB|G|1044
5J4D|1|GB|A|1045
5J4D|1|GB|A|1046
5J4D|1|GB|G|1047
5J4D|1|GB|A|1048
5J4D|1|GB|C|1049
5J4D|1|GB|A|1050
5J4D|1|GB|G|1051
*
5J4D|1|GB|U|1108
5J4D|1|GB|C|1109
5J4D|1|GB|G|1110
5J4D|1|GB|A|1111
5J4D|1|GB|G|1112
5J4D|1|GB|U|1113

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain NB

50S ribosomal protein L6