IL_5J4D_283

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGGUUGGCUUAGAAGCAGCCAUCCUUUAAAG*CAC

Length

36 nucleotides

Bulged bases

5J4D|1|GB|U|1061, 5J4D|1|GB|U|1066, 5J4D|1|GB|A|1069, 5J4D|1|GB|A|1070, 5J4D|1|GB|C|1075, 5J4D|1|GB|A|1077

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4D|1|GB|G|1055
5J4D|1|GB|G|1056
5J4D|1|GB|A|1057
5J4D|1|GB|G|1058
5J4D|1|GB|G|1059
5J4D|1|GB|U|1060
5J4D|1|GB|U|1061
5J4D|1|GB|G|1062
5J4D|1|GB|G|1063
5J4D|1|GB|C|1064
5J4D|1|GB|U|1065
5J4D|1|GB|U|1066
5J4D|1|GB|A|1067
5J4D|1|GB|G|1068
5J4D|1|GB|A|1069
5J4D|1|GB|A|1070
5J4D|1|GB|G|1071
5J4D|1|GB|C|1072
5J4D|1|GB|A|1073
5J4D|1|GB|G|1074
5J4D|1|GB|C|1075
5J4D|1|GB|C|1076
5J4D|1|GB|A|1077
5J4D|1|GB|U|1078
5J4D|1|GB|C|1079
5J4D|1|GB|C|1080
5J4D|1|GB|U|1081
5J4D|1|GB|U|1082
5J4D|1|GB|U|1083
5J4D|1|GB|A|1084
5J4D|1|GB|A|1085
5J4D|1|GB|A|1086
5J4D|1|GB|G|1087
*
5J4D|1|GB|C|1102
5J4D|1|GB|A|1103
5J4D|1|GB|C|1104

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain LC

50S ribosomal protein L36