IL_5J4D_292

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_292 not in the Motif Atlas

Homologous match to IL_9DFE_052

Geometric discrepancy: 0.2438

The information below is about IL_9DFE_052

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

5J4D|1|GB|U|1357
5J4D|1|GB|G|1358
5J4D|1|GB|A|1359
5J4D|1|GB|A|1360
5J4D|1|GB|G|1361
*
5J4D|1|GB|C|1370
5J4D|1|GB|G|1371
5J4D|1|GB|U|1372
5J4D|1|GB|A|1373
5J4D|1|GB|G|1374

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L28

Chain JB

50S ribosomal protein L2

Chain JC

50S ribosomal protein L34