IL_5J4D_299

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_299 not in the Motif Atlas

Homologous match to IL_9DFE_059

Geometric discrepancy: 0.1376

The information below is about IL_9DFE_059

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

5J4D|1|GB|A|1469
5J4D|1|GB|G|1470
5J4D|1|GB|A|1471
5J4D|1|GB|A|1472
5J4D|1|GB|G|1473
*
5J4D|1|GB|U|1520
5J4D|1|GB|G|1521
5J4D|1|GB|G|1522
5J4D|1|GB|U|1523

Current chains

Chain GB

25S ribosomal RNA

Nearby chains