IL_5J4D_300

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*CAAAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_300 not in the Motif Atlas

Homologous match to IL_9DFE_060

Geometric discrepancy: 0.5582

The information below is about IL_9DFE_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46086.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

1

Unit IDs

5J4D|1|GB|U|1481
5J4D|1|GB|G|1483
*
5J4D|1|GB|C|1506
5J4D|1|GB|A|1508
5J4D|1|GB|A|1509
5J4D|1|GB|A|1510
5J4D|1|GB|A|1511
5J4D|1|GB|G|1512

Current chains

Chain GB

25S ribosomal RNA

Nearby chains