IL_5J4D_315

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_315 not in the Motif Atlas

Geometric match to IL_8VTW_075

Geometric discrepancy: 0.0668

The information below is about IL_8VTW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

5J4D|1|GB|G|1933
5J4D|1|GB|C|1934
*
5J4D|1|GB|G|1964
5J4D|1|GB|C|1965
5J4D|1|GB|A|1966
5J4D|1|GB|C|1967

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain NC

Transfer RNA; tRNA

Chain OC

Peptide chain release factor 1