IL_5J4D_318

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

5J4D|1|GB|C|2055, 5J4D|1|GB|C|2612, 5J4D|1|GB|U|2613, 5J4D|1|GB|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_318 not in the Motif Atlas

Homologous match to IL_9DFE_079

Geometric discrepancy: 0.0758

The information below is about IL_9DFE_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70335.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5J4D|1|GB|A|2054
5J4D|1|GB|C|2055
5J4D|1|GB|G|2056
5J4D|1|GB|A|2057
*
5J4D|1|GB|U|2611
5J4D|1|GB|C|2612
5J4D|1|GB|U|2613
5J4D|1|GB|A|2614
5J4D|1|GB|U|2615

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain HC

50S ribosomal protein L32

Chain KB

50S ribosomal protein L3

Chain YB

50S ribosomal protein L22