IL_5J4D_325

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGCC*GGCGCCGGUGAAAUAC

Length

22 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4D|1|GB|G|2124
5J4D|1|GB|G|2125
5J4D|1|GB|A|2126
5J4D|1|GB|G|2127
5J4D|1|GB|C|2128
5J4D|1|GB|C|2129
*
5J4D|1|GB|G|2159
5J4D|1|GB|G|2160
5J4D|1|GB|C|2161
5J4D|1|GB|G|2162
5J4D|1|GB|C|2163
5J4D|1|GB|C|2164
5J4D|1|GB|G|2165
5J4D|1|GB|G|2166
5J4D|1|GB|U|2167
5J4D|1|GB|G|2168
5J4D|1|GB|A|2169
5J4D|1|GB|A|2170
5J4D|1|GB|A|2171
5J4D|1|GB|U|2172
5J4D|1|GB|A|2173
5J4D|1|GB|C|2174

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain IB

Transfer RNA; tRNA