IL_5J4D_328
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAG*CGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_328 not in the Motif Atlas
- Homologous match to IL_9DFE_089
- Geometric discrepancy: 0.0823
- The information below is about IL_9DFE_089
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
5J4D|1|GB|C|2350
5J4D|1|GB|G|2351
5J4D|1|GB|A|2352
5J4D|1|GB|G|2353
*
5J4D|1|GB|C|2364
5J4D|1|GB|G|2365
5J4D|1|GB|A|2366
5J4D|1|GB|G|2367
Current chains
- Chain GB
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 50S ribosomal protein L27
- Chain KC
- 50S ribosomal protein L35
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