IL_5J4D_333

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_333 not in the Motif Atlas

Homologous match to IL_9DFE_094

Geometric discrepancy: 0.1807

The information below is about IL_9DFE_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

5J4D|1|GB|A|2459
5J4D|1|GB|U|2460
5J4D|1|GB|C|2461
*
5J4D|1|GB|G|2489
5J4D|1|GB|G|2490
5J4D|1|GB|U|2491
5J4D|1|GB|U|2492
5J4D|1|GB|U|2493

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L27

Chain OC

Peptide chain release factor 1

Chain SB

50S ribosomal protein L16