IL_5J4D_334
3D structure
- PDB id
- 5J4D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CCGAG*CGGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J4D_334 not in the Motif Atlas
- Homologous match to IL_9DFE_095
- Geometric discrepancy: 0.0745
- The information below is about IL_9DFE_095
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
5J4D|1|GB|C|2466
5J4D|1|GB|C|2467
5J4D|1|GB|G|2468
5J4D|1|GB|A|2469
5J4D|1|GB|G|2470
*
5J4D|1|GB|C|2480
5J4D|1|GB|G|2481
5J4D|1|GB|G|2482
5J4D|1|GB|C|2483
5J4D|1|GB|G|2484
Current chains
- Chain GB
- 25S ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L25
- Chain LC
- 50S ribosomal protein L36
- Chain OC
- Peptide chain release factor 1
- Chain SB
- 50S ribosomal protein L16
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