IL_5J4D_340

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5J4D|1|GB|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_340 not in the Motif Atlas

Homologous match to IL_5J7L_344

Geometric discrepancy: 0.4562

The information below is about IL_5J7L_344

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

5J4D|1|GB|C|2591
5J4D|1|GB|G|2592
*
5J4D|1|GB|C|2601
5J4D|1|GB|A|2602
5J4D|1|GB|G|2603

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain CC

50S ribosomal protein L27

Chain JB

50S ribosomal protein L2

Chain NC

Transfer RNA; tRNA

Chain OC

Peptide chain release factor 1