IL_5J4D_350

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5J4D|1|HB|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_350 not in the Motif Atlas

Homologous match to IL_4V9F_101

Geometric discrepancy: 0.0986

The information below is about IL_4V9F_101

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

5J4D|1|HB|C|17
5J4D|1|HB|G|18
*
5J4D|1|HB|C|65
5J4D|1|HB|A|66
5J4D|1|HB|G|67

Current chains

Chain HB

5S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L25

Chain GB

Large subunit ribosomal RNA; LSU rRNA

Chain UB

50S ribosomal protein L18