IL_5J4D_356

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_356 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.0857

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.2

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5J4D|1|A|G|1401
5J4D|1|A|4OC|1402
5J4D|1|A|C|1403
5J4D|1|A|5MC|1404
*
5J4D|1|A|G|1497
5J4D|1|A|UR3|1498
5J4D|1|A|A|1499
5J4D|1|A|A|1500
5J4D|1|A|C|1501

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain HA

mRNA

Chain IA

Transfer RNA; tRNA

Chain JA

Peptide chain release factor 1