IL_5J4D_367

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

5J4D|1|FB|A|1492, 5J4D|1|FB|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_367 not in the Motif Atlas

Geometric match to IL_8UO6_002

Geometric discrepancy: 0.2337

The information below is about IL_8UO6_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

5J4D|1|FB|5MC|1407
5J4D|1|FB|A|1408
5J4D|1|FB|C|1409
*
5J4D|1|FB|G|1491
5J4D|1|FB|A|1492
5J4D|1|FB|A|1493
5J4D|1|FB|G|1494

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain GB

Large subunit ribosomal RNA; LSU rRNA

Chain MC

mRNA

Chain OC

Peptide chain release factor 1

Chain ZC

30S ribosomal protein S12