IL_5J4D_371

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGCCC*GGGUGACAAC

Length

18 nucleotides

Bulged bases

5J4D|1|GB|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J4D|1|GB|G|1526
5J4D|1|GB|G|1527
5J4D|1|GB|A|1528
5J4D|1|GB|A|1529
5J4D|1|GB|G|1530
5J4D|1|GB|C|1531
5J4D|1|GB|C|1532
5J4D|1|GB|C|1533
*
5J4D|1|GB|G|1538
5J4D|1|GB|G|1539
5J4D|1|GB|G|1540
5J4D|1|GB|U|1541
5J4D|1|GB|G|1542
5J4D|1|GB|A|1543
5J4D|1|GB|C|1544
5J4D|1|GB|A|1545
5J4D|1|GB|A|1546
5J4D|1|GB|C|1546|||B

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain TB

50S ribosomal protein L17