IL_5J4D_372

3D structure

PDB id

5J4D (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 bound to the 70S ribosome in response to a pseudouridylated stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J4D_372 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0666

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

5J4D|1|GB|G|1666
5J4D|1|GB|G|1667
5J4D|1|GB|A|1668
5J4D|1|GB|A|1669
5J4D|1|GB|C|1670
5J4D|1|GB|U|1671
5J4D|1|GB|C|1672
5J4D|1|GB|U|1673
5J4D|1|GB|G|1674
*
5J4D|1|GB|C|1990
5J4D|1|GB|U|1991
5J4D|1|GB|G|1992
5J4D|1|GB|U|1993
5J4D|1|GB|C|1994

Current chains

Chain GB

25S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain QB

50S ribosomal protein L14