IL_5J5B_020

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_020 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0305

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

5J5B|1|AA|U|409
5J5B|1|AA|G|410
5J5B|1|AA|A|411
5J5B|1|AA|A|412
5J5B|1|AA|G|413
5J5B|1|AA|A|414
5J5B|1|AA|A|415
5J5B|1|AA|G|416
*
5J5B|1|AA|U|427
5J5B|1|AA|G|428
5J5B|1|AA|U|429
5J5B|1|AA|A|430
5J5B|1|AA|A|431
5J5B|1|AA|A|432
5J5B|1|AA|G|433

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4