IL_5J5B_071

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

5J5B|1|BA|G|64, 5J5B|1|BA|A|65

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_071 not in the Motif Atlas

Homologous match to IL_5J7L_005

Geometric discrepancy: 0.0503

The information below is about IL_5J7L_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

5J5B|1|BA|C|63
5J5B|1|BA|G|64
5J5B|1|BA|A|65
5J5B|1|BA|A|66
*
5J5B|1|BA|U|103
5J5B|1|BA|G|104

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BT

30S ribosomal protein S20