IL_5J5B_088

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

5J5B|1|BA|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_088 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.0315

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5J5B|1|BA|G|446
5J5B|1|BA|G|447
5J5B|1|BA|A|448
5J5B|1|BA|G|449
5J5B|1|BA|G|450
*
5J5B|1|BA|C|483
5J5B|1|BA|G|484
5J5B|1|BA|U|485
5J5B|1|BA|U|486
5J5B|1|BA|A|487
5J5B|1|BA|C|488

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BP

30S ribosomal protein S16

Chain DH

50S ribosomal protein L9