IL_5J5B_118

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_118 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.0331

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

5J5B|1|BA|C|1129
5J5B|1|BA|A|1130
5J5B|1|BA|G|1131
5J5B|1|BA|C|1132
*
5J5B|1|BA|G|1142
5J5B|1|BA|G|1143

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BI

30S ribosomal protein S9

Chain BJ

30S ribosomal protein S10