IL_5J5B_142

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

5J5B|1|CA|A|504, 5J5B|1|CA|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_142 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.0467

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

5J5B|1|CA|G|481
5J5B|1|CA|A|482
5J5B|1|CA|A|483
5J5B|1|CA|C|484
*
5J5B|1|CA|G|496
5J5B|1|CA|A|497
5J5B|1|CA|G|498
5J5B|1|CA|U|499
5J5B|1|CA|G|500
5J5B|1|CA|A|501
5J5B|1|CA|A|502
5J5B|1|CA|A|503
5J5B|1|CA|A|504
5J5B|1|CA|A|505
5J5B|1|CA|G|506
5J5B|1|CA|A|507
5J5B|1|CA|A|508
5J5B|1|CA|C|509

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CT

50S ribosomal protein L22

Chain CV

50S ribosomal protein L24