IL_5J5B_167
3D structure
- PDB id
- 5J5B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the WT E coli ribosome bound to tetracycline
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 5J5B|1|CA|A|1127, 5J5B|1|CA|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5J5B_167 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.0516
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5J5B|1|CA|G|1024
5J5B|1|CA|G|1025
5J5B|1|CA|G|1026
5J5B|1|CA|A|1027
5J5B|1|CA|A|1028
5J5B|1|CA|A|1029
5J5B|1|CA|C|1030
*
5J5B|1|CA|G|1124
5J5B|1|CA|G|1125
5J5B|1|CA|A|1126
5J5B|1|CA|A|1127
5J5B|1|CA|G|1128
5J5B|1|CA|A|1129
5J5B|1|CA|U|1130
5J5B|1|CA|G|1131
5J5B|1|CA|U|1132
5J5B|1|CA|A|1133
5J5B|1|CA|A|1134
5J5B|1|CA|C|1135
5J5B|1|CA|G|1136
5J5B|1|CA|G|1137
5J5B|1|CA|G|1138
5J5B|1|CA|G|1139
5J5B|1|CA|C|1140
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C5
- 50S ribosomal protein L36
- Chain CD
- 50S ribosomal protein L3
- Chain CK
- 50S ribosomal protein L13
- Chain CN
- 50S ribosomal protein L16
Coloring options: