IL_5J5B_176

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_176 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0609

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5J5B|1|CA|A|1262
5J5B|1|CA|U|1263
5J5B|1|CA|A|1264
5J5B|1|CA|A|1265
5J5B|1|CA|G|1266
5J5B|1|CA|U|1267
5J5B|1|CA|A|1268
5J5B|1|CA|A|1269
*
5J5B|1|CA|U|2011
5J5B|1|CA|G|2012
5J5B|1|CA|A|2013
5J5B|1|CA|A|2014
5J5B|1|CA|A|2015
5J5B|1|CA|U|2016
5J5B|1|CA|U|2017

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C1

50S ribosomal protein L32

Chain CE

50S ribosomal protein L4

Chain CT

50S ribosomal protein L22