IL_5J5B_195

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5J5B|1|CA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_195 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0434

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5J5B|1|CA|C|1686
5J5B|1|CA|G|1687
5J5B|1|CA|U|1688
5J5B|1|CA|A|1689
5J5B|1|CA|A|1690
5J5B|1|CA|C|1691
*
5J5B|1|CA|G|1696
5J5B|1|CA|G|1697
5J5B|1|CA|A|1698
5J5B|1|CA|G|1699
5J5B|1|CA|A|1700
5J5B|1|CA|A|1701
5J5B|1|CA|G|1702

Current chains

Chain CA

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain CC

50S ribosomal protein L2