IL_5J5B_226

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGG*C(PSU)GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_226 not in the Motif Atlas

Homologous match to IL_5J7L_339

Geometric discrepancy: 0.0633

The information below is about IL_5J7L_339

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5J5B|1|CA|C|2507
5J5B|1|CA|G|2508
5J5B|1|CA|G|2509
*
5J5B|1|CA|C|2579
5J5B|1|CA|PSU|2580
5J5B|1|CA|G|2581
5J5B|1|CA|G|2582

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CD

50S ribosomal protein L3