IL_5J5B_252

3D structure

PDB id

5J5B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the WT E coli ribosome bound to tetracycline

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5J5B_252 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.0264

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5J5B|1|DA|G|188
5J5B|1|DA|G|189
5J5B|1|DA|A|190
5J5B|1|DA|A|191
5J5B|1|DA|C|192
5J5B|1|DA|U|193
5J5B|1|DA|G|194
*
5J5B|1|DA|C|201
5J5B|1|DA|U|202
5J5B|1|DA|A|203
5J5B|1|DA|A|204
5J5B|1|DA|G|205
5J5B|1|DA|U|206
5J5B|1|DA|A|207
5J5B|1|DA|C|208

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L35

Chain DM

50S ribosomal protein L15

Chain DY

50S ribosomal protein L28